BUILDING MODELS
Flynn, K. J. (2026). Dynamic Ecology in Powersim Studio 10 Cockpit. Zenodo. https://doi.org/10.5281/zenodo.23081123
Flynn, K. J. (2026). Dynamic Ecology – an introduction to the art of simulating trophic dynamics 2nd Edition. Zenodo. https://doi.org/10.5281/zenodo.23081075
Mitra, A. (2025). Developing a simple digital twin of red Noctiluca scintillans. In Defra Pelagic Monitoring Programme (mNCEA, ME4528) Report NC34 WP2 D28.1. Zenodo. https://doi.org/10.5281/zenodo.16933559
Flynn, K. J. (2024). Powersim Studio – ‘How-To-Do’ (Version v1). Zenodo. https://doi.org/10.5281/zenodo.12086773
Flynn, K. J., & Mitra, A. (2024). DRAMA – a cybernetic approach for Plankton Digital Twins (Version v4). Zenodo. https://doi.org/10.5281/zenodo.13354425
Akoglu, E., & Flynn, K. J. (2020). Dynamic Ecology in GNU Octave. Zenodo. https://doi.org/10.5281/zenodo.4279642
OCEAN & WATER LITERACY
Mitra, A., Flynn, K., & Mitra-Flynn, R. (2026). ‘Sea Sparkle’ – Simulator of bioluminescent red Noctiluca blooms [in English and in Spanish]. Zenodo. https://doi.org/10.5281/zenodo.21720987
Mitra, A., & Flynn, K. J. (2026). MixoExplorer. Zenodo. https://doi.org/10.5281/zenodo.19826771
Flynn, K. J. (2026). Life in the shallows – exploring plankton production in the water column. Zenodo. https://doi.org/10.5281/zenodo.19187985
Flynn, K. J., & Lessin, G. (2026). Ocean Acidification – a teaching guide. Zenodo. https://doi.org/10.5281/zenodo.18630375
Mitra, A. (2026). Red Noctiluca Simulator. In Defra Pelagic Monitoring Programme (mNCEA, ME4528) Report NC34 WP2 D28.2. Zenodo. https://doi.org/10.5281/zenodo.21722265
Mitra, A. (2025). Red Noctiluca Simulator: Operation Manual. In Defra Pelagic Monitoring Programme (mNCEA, ME4528) Report NC34 WP2 D28.1. Zenodo. https://doi.org/10.5281/zenodo.16933521
Flynn, K. J., & Lessin, G. (2025). Getting too warm: exploring effects of temperature upon aquatic ecosystems – a teaching guide. Zenodo. https://doi.org/10.5281/zenodo.17522205
Flynn, K. J. (2025). Getting too warm: exploring effects of temperature upon aquatic ecosystems – a teaching model. Zenodo. https://doi.org/10.5281/zenodo.17521978
Flynn, K. J. (2024). Exploring eutrophication – polluting with too much of a good thing; a teaching guide (Version v1). Zenodo. https://doi.org/10.5281/zenodo.12529790
BIOTECH
Flynn, K. J. (2026). Microalgae Culture Decision Support Tool (MCDST) Explorer v2. Zenodo. https://doi.org/10.5281/zenodo.23210887
Flynn, K. J. (2026). Microalgae Culture Decision Support Tool (MCDST) Explorer version. Zenodo. https://doi.org/10.5281/zenodo.20330858
RESEARCH
Mitra, A. (2026). Bacterial farming by mixoplankton under climate change – a digital twin to explore impact of nutrient loadings and N:P on plankton dynamics. Zenodo. https://doi.org/10.5281/zenodo.21773889
Flynn, K. J., & Mitra, A. (2025). Simulation of the emergence of nitrification during DOM processing by marine microbial assemblages. Zenodo. https://doi.org/10.5281/zenodo.17579954
Flynn, K. J., & Mitra, A. (2024). Bacteria-DRAMA – a framework for developing digital twins for bacteria plankton (Version v1). Zenodo. https://doi.org/10.5281/zenodo.12625667
Flynn, K. J., & Mitra, A. (2024). BacteriaDRAMA (Version v1). Zenodo. https://doi.org/10.5281/zenodo.12721247
Flynn, K. J., & Mitra, A. (2021). A Simple N-based Mixoplankton Model. Zenodo. https://doi.org/10.5281/zenodo.5040445
Flynn, K. J., & Mitra, A. (2021). A Simple N-based Mixoplankton Model; Cockpit version. Zenodo. https://doi.org/10.5281/zenodo.5026516
REPORTS
Mitra, A. (2026). Developing a better definition of flow cytometric life forms under the mixoplankton paradigm – Qualification and quantification of pico- and nano-plankton. Zenodo. https://doi.org/10.5281/zenodo.21774577
Flynn, K. J. (2024). Simulating Plankton – getting it right in the era of Digital Twins of The Ocean; projection introduction and executive discussion. Zenodo. https://doi.org/10.5281/zenodo.10953378
Anschütz, A.-A., Maselli, M., Traboni, C., Stolte, W., Mitra, A., & Flynn, K. (2024). Importance of integration of the mixoplankton paradigm within Marine Framework Directives. Zenodo. https://doi.org/10.5281/zenodo.10684459
Mitra, A., Caron, D. A., Faure, E., Flynn, K. J., Gonçalves Leles, S., Hansen, P. J., McManus, G. B., Not, F., Rosario Gomes, H. d ., Santoferrara, L., Stoecker, D. K., & TIllmann, U. (2023). The Mixoplankton Database (MDB) (Version 2) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7839780
Flynn Kevin John, Mitra Aditee, Glibert Patricia, & Smyth Timothy. (2022). Overarching questions, new approaches and technologies in mixoplankton research. 2021 Mixoplankton International Workshop Report. Zenodo. https://doi.org/10.5281/zenodo.5911446
Mitra, A., Gypens, N., Hansen, P. J., Flynn, K. J., Pitta, P., Martin, J. L., Mansour, J., Maselli, M., Romano, F., & Not, F. (2021). A guide for field studies and environmental monitoring of mixoplankton populations. Zenodo. https://doi.org/10.5281/zenodo.5993452